Index

_

__init__() (tomoscan.esrf.identifier.edfidentifier.EDFTomoScanIdentifier method) (tomoscan.esrf.identifier.edfidentifier.EDFVolumeIdentifier method) (tomoscan.esrf.identifier.folderidentifier.BaseFolderAndfilePrefixIdentifierMixIn method) (tomoscan.esrf.identifier.folderidentifier.BaseFolderIdentifierMixIn method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5TomoScanIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5VolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.NXtomoScanIdentifier method) (tomoscan.esrf.identifier.jp2kidentifier.JP2KVolumeIdentifier method) (tomoscan.esrf.identifier.rawidentifier.RawVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.MultiTiffVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.TIFFVolumeIdentifier method) (tomoscan.esrf.identifier.url_utils.UrlSettings method) (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer method) (tomoscan.esrf.scan.framereducer.hdf5framereducer.HDF5FrameReducer method) (tomoscan.esrf.scan.mock.MockEDF method) (tomoscan.esrf.scan.mock.MockHDF5 method) (tomoscan.esrf.scan.mock.MockNXtomo method) (tomoscan.esrf.scan.mock.ScanMock method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.esrf.scan.nxtomoscan.TomoFrame method) (tomoscan.esrf.scan.nxtomoscan.XRD3DFrame method) (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.mock.Scene method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.factory.Factory method) (tomoscan.framereducerbase.FrameReducerBase method) (tomoscan.framereducerbase.ReduceMethod method) (tomoscan.framereducerbase.REDUCER_TARGET method) (tomoscan.identifier.BaseIdentifier method) (tomoscan.identifier.ScanIdentifier method) (tomoscan.identifier.VolumeIdentifier method) (tomoscan.io.HDF5File method) (tomoscan.normalization.IntensityNormalization method) (tomoscan.normalization.Method method) (tomoscan.progress.Progress method) (tomoscan.scanbase.ComputeMethod method) (tomoscan.scanbase.ReducedFramesInfos method) (tomoscan.scanbase.Source method) (tomoscan.scanbase.SourceType method) (tomoscan.scanbase.TomoScanBase method) (tomoscan.serie.Serie method) (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) (tomoscan.test.utils.MockContext method) (tomoscan.test.utils.NXtomoMockContext method) (tomoscan.test.utils.UtilsTest method) (tomoscan.tomoobject.TomoObject method) (tomoscan.unitsystem.ElectricCurrentSystem method) (tomoscan.unitsystem.EnergySI method) (tomoscan.unitsystem.MetricSystem method) (tomoscan.unitsystem.TimeSystem method) (tomoscan.unitsystem.Unit method) (tomoscan.utils.geometry.BoundingBox1D method) (tomoscan.utils.geometry.BoundingBox3D method) (tomoscan.utils.hdf5.DatasetReader method) (tomoscan.utils.io.SharedLockPool method) (tomoscan.validator.BasicScanValidator method) (tomoscan.validator.DarkDatasetValidator method) (tomoscan.validator.DarkEntryValidator method) (tomoscan.validator.DistanceValidator method) (tomoscan.validator.EnergyValidator method) (tomoscan.validator.FlatDatasetValidator method) (tomoscan.validator.FlatEntryValidator method) (tomoscan.validator.PixelValidator method) (tomoscan.validator.ProjectionDatasetValidator method) (tomoscan.validator.ProjectionEntryValidator method) (tomoscan.validator.ReconstructionValidator method) (tomoscan.validator.ValidatorBase method) (tomoscan.volumebase.VolumeBase method)

A

acquire_context_creation() (tomoscan.utils.io.SharedLockPool method) addClassCleanup() (tomoscan.test.test_io.TestCheckVirtualSourcesExists class method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection class method) addCleanup() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) addTypeEqualityFunc() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) alignment_projections (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) append() (tomoscan.serie.Serie method) assertAlmostEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertCountEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertDictContainsSubset() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertFalse() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertGreater() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertGreaterEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertIn() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertIs() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertIsInstance() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertIsNone() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertIsNot() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertIsNotNone() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method)

assertLess() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertLessEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertListEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertLogs() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertMultiLineEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertNotAlmostEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertNotEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertNotIn() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertNotIsInstance() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertNotRegex() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertRaises() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertRaisesRegex() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertRegex() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertSequenceEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertSetEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertTrue() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertTupleEqual() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertWarns() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) assertWarnsRegex() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) attrs (tomoscan.io.HDF5File property)

B

BaseFolderAndfilePrefixIdentifierMixIn (class in tomoscan.esrf.identifier.folderidentifier) BaseFolderIdentifierMixIn (class in tomoscan.esrf.identifier.folderidentifier) BaseIdentifier (class in tomoscan.identifier) BasicScanValidator (class in tomoscan.validator) BoundingBox1D (class in tomoscan.utils.geometry) BoundingBox3D (class in tomoscan.utils.geometry) browse_data_files() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) browse_data_urls() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method)

browse_metadata_files() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) browse_slices() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) build_virtual_dataset() (tomoscan.io.HDF5File method)

C

calc_hexversion() (in module tomoscan.version) changetmp() (in module tomoscan.test.conftest) check_grp_is_valid() (in module tomoscan.esrf.scan.utils) check_has_tiffle_file() (in module tomoscan.esrf.volume.tiffvolume) check_possible_issue_with_rlimit() (in module tomoscan.esrf.scan.utils) check_serie_is_consistant_frm_sample_name() (in module tomoscan.serie) check_virtual_sources_exist() (in module tomoscan.io) checkup() (tomoscan.validator.BasicScanValidator method) (tomoscan.validator.ReconstructionValidator method) clear() (tomoscan.io.HDF5File method) (tomoscan.serie.Serie method) clear_cache() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) clear_caches() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) clip_values (tomoscan.esrf.volume.jp2kvolume.JP2KVolume property) close() (tomoscan.io.HDF5File method) compute_reduced_darks() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method)

compute_reduced_flats() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) ComputeMethod (class in tomoscan.scanbase) concatenate() (in module tomoscan.utils.volume) copy() (tomoscan.io.HDF5File method) (tomoscan.serie.Serie method) copy_h5_dict_darks_to() (in module tomoscan.esrf.scan.utils) copy_h5_dict_flats_to() (in module tomoscan.esrf.scan.utils) count() (tomoscan.serie.Serie method) count_time (tomoscan.scanbase.ReducedFramesInfos property) create_dataset() (tomoscan.io.HDF5File method) create_dataset_like() (tomoscan.io.HDF5File method) create_group() (tomoscan.io.HDF5File method) create_scan_object() (tomoscan.factory.Factory static method) create_scan_object_frm_dict() (tomoscan.factory.Factory static method) create_scan_objects() (tomoscan.factory.Factory static method) create_tomo_object_from_identifier() (tomoscan.factory.Factory static method) create_virtual_dataset() (tomoscan.io.HDF5File method) create_volume() (in module tomoscan.esrf.volume.mock) cwd_context() (in module tomoscan.esrf.scan.utils)

D

DarkDatasetValidator (class in tomoscan.validator) DarkEntryValidator (class in tomoscan.validator) darks (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) data_file_name_generator() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) data_file_saver_generator() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) dataset_has_broken_vds() (in module tomoscan.esrf.scan.utils) DatasetReader (class in tomoscan.utils.hdf5) debug() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) deduce_data_and_metadata_urls() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method)

deprecated() (in module tomoscan.utils.io) deprecated_warning() (in module tomoscan.utils.io) detector_transformations (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) distance (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) DistanceValidator (class in tomoscan.validator) doClassCleanups() (tomoscan.test.test_io.TestCheckVirtualSourcesExists class method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection class method) doCleanups() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) docstring() (in module tomoscan.utils.decorator) DownloadDataset() (in module tomoscan.test.utils) driver (tomoscan.io.HDF5File property) dump_info_file() (in module tomoscan.esrf.scan.utils)

E

EDFFrameReducer (class in tomoscan.esrf.scan.framereducer.edfframereducer) EDFTomoScan (class in tomoscan.esrf.scan.edfscan) EDFTomoScanIdentifier (class in tomoscan.esrf.identifier.edfidentifier) EDFVolume (class in tomoscan.esrf.volume.edfvolume) EDFVolumeIdentifier (class in tomoscan.esrf.identifier.edfidentifier) electric_current (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) ElectricCurrentSystem (class in tomoscan.unitsystem) energy (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) EnergySI (class in tomoscan.unitsystem) EnergyValidator (class in tomoscan.validator) equal() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method)

estimated_cor_frm_motor (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) example_defined_from_str_identifier() (tomoscan.esrf.volume.edfvolume.EDFVolume static method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume static method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume static method) (tomoscan.esrf.volume.rawvolume.RawVolume static method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase static method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume static method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume static method) (tomoscan.volumebase.VolumeBase static method) extend() (tomoscan.serie.Serie method) extract_urls_from_edf() (in module tomoscan.esrf.scan.utils)

F

Factory (class in tomoscan.factory) fail() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) failureException (tomoscan.test.test_io.TestCheckVirtualSourcesExists attribute) (tomoscan.test.test_scanbase.TestFlatFieldCorrection attribute) fastMockAcquisition() (tomoscan.esrf.scan.mock.MockEDF static method) field_of_view (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) file (tomoscan.io.HDF5File property) filename (tomoscan.io.HDF5File property) flat_field_correction() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) FlatDatasetValidator (class in tomoscan.validator) FlatEntryValidator (class in tomoscan.validator) flats (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) flush() (tomoscan.io.HDF5File method) format_data_path_for_data() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method)

FRAME_REDUCER_CLASS (tomoscan.esrf.scan.edfscan.EDFTomoScan attribute) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan attribute) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan attribute) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan attribute) (tomoscan.scanbase.TomoScanBase attribute) FrameReducerBase (class in tomoscan.framereducerbase) frames (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) from_absolute_reduced_frames_to_relative() (in module tomoscan.esrf.scan.utils) from_dict_of_str() (tomoscan.serie.Serie static method) from_identifier() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) (tomoscan.esrf.volume.edfvolume.EDFVolume static method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume static method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume static method) (tomoscan.esrf.volume.rawvolume.RawVolume static method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase static method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume static method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume static method) (tomoscan.scanbase.TomoScanBase static method) (tomoscan.tomoobject.TomoObject static method) (tomoscan.volumebase.VolumeBase static method) from_relative_reduced_frames_to_absolute() (in module tomoscan.esrf.scan.utils) from_sequences_to_grps() (in module tomoscan.esrf.scan.utils)

G

get() (tomoscan.io.HDF5File method) get_available_threads() (in module tomoscan.esrf.volume.jp2kvolume) get_bounding_box() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.scanbase.TomoScanBase method) (tomoscan.tomoobject.TomoObject method) (tomoscan.volumebase.VolumeBase method) get_closest_SR_current() (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer static method) get_compacted_dataslices() (in module tomoscan.esrf.scan.utils) get_darks_url() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) get_data() (in module tomoscan.esrf.scan.utils) get_data_path_pattern_for_data() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) get_datasets_linked_to_vds() (in module tomoscan.esrf.scan.utils) get_default_data_path_for_volume() (in module tomoscan.esrf.volume.hdf5volume) get_distance() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_files_from_pattern() (in module tomoscan.esrf.scan.utils) get_flats_url() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) get_identifier() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.scanbase.TomoScanBase method) (tomoscan.tomoobject.TomoObject method) (tomoscan.volumebase.VolumeBase method) get_min_max() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method)

get_min_max_values() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) get_most_common_extension() (in module tomoscan.esrf.volume.utils) get_nexus_paths() (in module tomoscan.esrf.scan.nxtomoscan) get_originals() (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer method) get_parameters_frm_par_or_info() (in module tomoscan.esrf.scan.utils) get_proj_angle_url() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_proj_urls() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) get_projections_intensity_monitor() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_relative_file() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_series() (tomoscan.esrf.scan.framereducer.hdf5framereducer.HDF5FrameReducer method) get_sinogram() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) get_subvolume_shape() (in module tomoscan.utils.geometry) get_unique_files_linked() (in module tomoscan.esrf.scan.utils) get_valid_entries() (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) get_volume_output_file_name() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) (tomoscan.scanbase.TomoScanBase static method) getDatasets() (tomoscan.test.utils.UtilsTest class method) group_size (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) grp_is_complete() (in module tomoscan.esrf.scan.utils) guess_hdf5_volume_data_paths() (in module tomoscan.esrf.volume.utils) guess_index_frm_file_name() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) guess_volumes() (in module tomoscan.esrf.volume.utils)

H

hasInternalTest() (tomoscan.test.utils.UtilsTest class method) HDF5File (class in tomoscan.io) HDF5FrameReducer (class in tomoscan.esrf.scan.framereducer.hdf5framereducer) HDF5TomoScan (class in tomoscan.esrf.scan.nxtomoscan)

HDF5TomoScanIdentifier (class in tomoscan.esrf.identifier.hdf5Identifier) HDF5Volume (class in tomoscan.esrf.volume.hdf5volume) HDF5VolumeIdentifier (class in tomoscan.esrf.identifier.hdf5Identifier) HDF5XRD3DScan (class in tomoscan.esrf.scan.nxtomoscan) header (tomoscan.esrf.volume.edfvolume.EDFVolume property)

I

id (tomoscan.io.HDF5File property) ignore_projections (tomoscan.esrf.scan.edfscan.EDFTomoScan attribute) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan attribute) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan attribute) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan attribute) (tomoscan.scanbase.TomoScanBase attribute) index() (tomoscan.serie.Serie method) insert() (tomoscan.serie.Serie method) instrument_name (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) IntensityNormalization (class in tomoscan.normalization)

is_a_proj_path() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) is_abort() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) is_tomoscan_dir() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) (tomoscan.factory.Factory static method) (tomoscan.scanbase.TomoScanBase static method) is_valid_for_reconstruction() (in module tomoscan.validator) isErrno() (in module tomoscan.io) items() (tomoscan.io.HDF5File method)

J

join_path() (in module tomoscan.esrf.identifier.url_utils) join_query() (in module tomoscan.esrf.identifier.url_utils)

join_string() (in module tomoscan.esrf.identifier.url_utils) JP2KVolume (class in tomoscan.esrf.volume.jp2kvolume) JP2KVolumeIdentifier (class in tomoscan.esrf.identifier.jp2kidentifier)

K

keys() (tomoscan.io.HDF5File method)

L

libver (tomoscan.io.HDF5File property) load_chunk() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) load_data_serie() (tomoscan.esrf.scan.framereducer.hdf5framereducer.HDF5FrameReducer method) load_frame() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method)

load_from_dict() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) load_reduced_darks() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) load_reduced_flats() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method)

M

machine_electric_current (tomoscan.scanbase.ReducedFramesInfos property) magnification (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) map_urls_on_scan_range() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method) (tomoscan.scanbase.TomoScanBase static method) meta_block_size (tomoscan.io.HDF5File property) Method (class in tomoscan.normalization) MetricSystem (class in tomoscan.unitsystem) MockContext (class in tomoscan.test.utils) MockEDF (class in tomoscan.esrf.scan.mock) MockHDF5 (class in tomoscan.esrf.scan.mock) MockNXtomo (class in tomoscan.esrf.scan.mock) mockReconstruction() (tomoscan.esrf.scan.mock.MockEDF static method) mockScan() (tomoscan.esrf.scan.mock.MockEDF static method) mode (tomoscan.io.HDF5File property) module tomoscan tomoscan.esrf tomoscan.esrf.edfscan tomoscan.esrf.hdf5scan tomoscan.esrf.identifier tomoscan.esrf.identifier.edfidentifier tomoscan.esrf.identifier.folderidentifier tomoscan.esrf.identifier.hdf5Identifier tomoscan.esrf.identifier.jp2kidentifier tomoscan.esrf.identifier.rawidentifier tomoscan.esrf.identifier.tiffidentifier tomoscan.esrf.identifier.url_utils tomoscan.esrf.mock tomoscan.esrf.scan tomoscan.esrf.scan.edfscan tomoscan.esrf.scan.framereducer tomoscan.esrf.scan.framereducer.edfframereducer tomoscan.esrf.scan.framereducer.hdf5framereducer tomoscan.esrf.scan.hdf5scan tomoscan.esrf.scan.mock tomoscan.esrf.scan.nxtomoscan tomoscan.esrf.scan.utils tomoscan.esrf.utils tomoscan.esrf.volume tomoscan.esrf.volume.edfvolume tomoscan.esrf.volume.hdf5volume tomoscan.esrf.volume.jp2kvolume tomoscan.esrf.volume.mock tomoscan.esrf.volume.rawvolume tomoscan.esrf.volume.singleframebase tomoscan.esrf.volume.tiffvolume tomoscan.esrf.volume.utils tomoscan.factory tomoscan.framereducerbase tomoscan.identifier tomoscan.io tomoscan.nexus tomoscan.nexus.paths tomoscan.nexus.paths.nxdetector tomoscan.nexus.paths.nxinstrument tomoscan.nexus.paths.nxmonitor tomoscan.nexus.paths.nxsample tomoscan.nexus.paths.nxsource tomoscan.nexus.paths.nxtomo tomoscan.nexus.paths.nxtransformations tomoscan.nexus.utils tomoscan.normalization tomoscan.progress tomoscan.scanbase tomoscan.scanfactory tomoscan.serie tomoscan.test tomoscan.test.conftest tomoscan.test.test_framereducerbase tomoscan.test.test_hdf5_utils tomoscan.test.test_io tomoscan.test.test_normalization tomoscan.test.test_progress tomoscan.test.test_scanbase tomoscan.test.test_scanfactory tomoscan.test.test_serie tomoscan.test.test_tomoobject tomoscan.test.test_utils tomoscan.test.test_validator tomoscan.test.test_version tomoscan.test.test_volume_base tomoscan.test.test_volume_utils tomoscan.test.utils tomoscan.tomoobject tomoscan.unitsystem tomoscan.unitsystem.electriccurrentsystem tomoscan.unitsystem.energysystem tomoscan.unitsystem.metricsystem tomoscan.unitsystem.timesystem tomoscan.unitsystem.unit tomoscan.unitsystem.voltagesystem tomoscan.utils tomoscan.utils.decorator tomoscan.utils.geometry tomoscan.utils.hdf5 tomoscan.utils.io tomoscan.utils.volume tomoscan.validator tomoscan.version tomoscan.volumebase

move() (tomoscan.io.HDF5File method) MultiTIFFVolume (class in tomoscan.esrf.volume.tiffvolume) MultiTiffVolumeIdentifier (class in tomoscan.esrf.identifier.tiffidentifier)

N

name (tomoscan.io.HDF5File property) node_is_nxtomo() (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan static method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan static method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan static method)

normalize_chebyshev_2D() (in module tomoscan.normalization) normalize_lsqr_spline_2D() (in module tomoscan.normalization) NXtomoMockContext (class in tomoscan.test.utils) NXtomoScan (class in tomoscan.esrf.scan.nxtomoscan) NXtomoScanIdentifier (class in tomoscan.esrf.identifier.hdf5Identifier)

P

parent (tomoscan.io.HDF5File property) path (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) pixel_size (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) PixelValidator (class in tomoscan.validator) pop() (tomoscan.io.HDF5File method) (tomoscan.serie.Serie method) popitem() (tomoscan.io.HDF5File method) position (tomoscan.esrf.volume.edfvolume.EDFVolume property) (tomoscan.esrf.volume.hdf5volume.HDF5Volume property) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume property) (tomoscan.esrf.volume.rawvolume.RawVolume property) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase property) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume property) (tomoscan.esrf.volume.tiffvolume.TIFFVolume property) (tomoscan.volumebase.VolumeBase property)

Progress (class in tomoscan.progress) ProjectionDatasetValidator (class in tomoscan.validator) ProjectionEntryValidator (class in tomoscan.validator) projections (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) projections_compacted (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) protect() (tomoscan.io.HDF5File method)

R

RAW_DARK_RE (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer attribute) RAW_FLAT_RE (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer attribute) RawVolume (class in tomoscan.esrf.volume.rawvolume) RawVolumeIdentifier (class in tomoscan.esrf.identifier.rawidentifier) ReconstructionValidator (class in tomoscan.validator) recreate_object() (tomoscan.esrf.identifier.edfidentifier.EDFTomoScanIdentifier method) (tomoscan.esrf.identifier.edfidentifier.EDFVolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5TomoScanIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5VolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.NXtomoScanIdentifier method) (tomoscan.esrf.identifier.jp2kidentifier.JP2KVolumeIdentifier method) (tomoscan.esrf.identifier.rawidentifier.RawVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.MultiTiffVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.TIFFVolumeIdentifier method) (tomoscan.identifier.BaseIdentifier method) (tomoscan.identifier.ScanIdentifier method) (tomoscan.identifier.VolumeIdentifier method) ReducedFramesInfos (class in tomoscan.scanbase) ReduceMethod (class in tomoscan.framereducerbase)

REDUCER_TARGET (class in tomoscan.framereducerbase) ref (tomoscan.io.HDF5File property) regionref (tomoscan.io.HDF5File property) remove() (tomoscan.serie.Serie method) remove_raw_files() (tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer method) require_dataset() (tomoscan.io.HDF5File method) require_group() (tomoscan.io.HDF5File method) rescale_data() (in module tomoscan.utils.volume) retrieve_information() (tomoscan.esrf.scan.edfscan.EDFTomoScan static method) reverse() (tomoscan.serie.Serie method) run() (tomoscan.validator.DarkDatasetValidator method) (tomoscan.validator.DarkEntryValidator method) (tomoscan.validator.DistanceValidator method) (tomoscan.validator.EnergyValidator method) (tomoscan.validator.FlatDatasetValidator method) (tomoscan.validator.FlatEntryValidator method) (tomoscan.validator.PixelValidator method) (tomoscan.validator.ProjectionDatasetValidator method) (tomoscan.validator.ProjectionEntryValidator method)

S

sample_name (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) save_data() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) save_frame() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) save_metadata() (tomoscan.esrf.volume.edfvolume.EDFVolume method) (tomoscan.esrf.volume.hdf5volume.HDF5Volume method) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume method) (tomoscan.esrf.volume.rawvolume.RawVolume method) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase method) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume method) (tomoscan.esrf.volume.tiffvolume.TIFFVolume method) (tomoscan.volumebase.VolumeBase method) save_reduced_darks() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) save_reduced_flats() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) ScanIdentifier (class in tomoscan.identifier) ScanMock (class in tomoscan.esrf.scan.mock) Scene (class in tomoscan.esrf.volume.mock) sequence_name (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property)

sequences_to_series_from_sample_name() (in module tomoscan.serie) Serie (class in tomoscan.serie) serie_is_complete_from_group_size() (in module tomoscan.serie) set_check_behavior() (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) setdefault() (tomoscan.io.HDF5File method) setUp() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) setup_multithread_encoding() (tomoscan.esrf.volume.jp2kvolume.JP2KVolume static method) setUpClass() (tomoscan.test.test_io.TestCheckVirtualSourcesExists class method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection class method) SharedLockPool (class in tomoscan.utils.io) short_description() (tomoscan.esrf.identifier.edfidentifier.EDFTomoScanIdentifier method) (tomoscan.esrf.identifier.edfidentifier.EDFVolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5TomoScanIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.HDF5VolumeIdentifier method) (tomoscan.esrf.identifier.hdf5Identifier.NXtomoScanIdentifier method) (tomoscan.esrf.identifier.jp2kidentifier.JP2KVolumeIdentifier method) (tomoscan.esrf.identifier.rawidentifier.RawVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.MultiTiffVolumeIdentifier method) (tomoscan.esrf.identifier.tiffidentifier.TIFFVolumeIdentifier method) (tomoscan.identifier.BaseIdentifier method) (tomoscan.identifier.ScanIdentifier method) (tomoscan.identifier.VolumeIdentifier method) shortDescription() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) skipTest() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) sort() (tomoscan.serie.Serie method) Source (class in tomoscan.scanbase) SourceType (class in tomoscan.scanbase) split_path() (in module tomoscan.esrf.identifier.url_utils) split_query() (in module tomoscan.esrf.identifier.url_utils) subTest() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) swmr_mode (tomoscan.io.HDF5File property)

T

tearDown() (tomoscan.test.test_io.TestCheckVirtualSourcesExists method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) tearDownClass() (tomoscan.test.test_io.TestCheckVirtualSourcesExists class method) (tomoscan.test.test_scanbase.TestFlatFieldCorrection class method) test_advancement() (in module tomoscan.test.test_progress) test_bounding_box_1D() (in module tomoscan.test.test_utils) test_bounding_box_3D() (in module tomoscan.test.test_utils) test_bounding_box_base() (in module tomoscan.test.test_utils) test_concatenate_volume() (in module tomoscan.test.test_volume_utils) test_concatenate_volume_errors() (in module tomoscan.test.test_volume_utils) test_edf_scan_creation() (in module tomoscan.test.test_scanfactory) test_errors_DatasetReader() (in module tomoscan.test.test_hdf5_utils) test_flat_field_data_numpy_array() (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) test_flat_field_data_url() (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) test_frame_broken_vds() (in module tomoscan.test.test_validator) test_frame_data_with_nan() (in module tomoscan.test.test_validator) test_FrameReducerBase_instanciation() (in module tomoscan.test.test_framereducerbase) test_frames_validator() (in module tomoscan.test.test_validator) test_frames_validator_2() (in module tomoscan.test.test_validator) test_frames_validator_3() (in module tomoscan.test.test_validator) test_get_flats_weights() (tomoscan.test.test_scanbase.TestFlatFieldCorrection method) test_get_sinogram() (in module tomoscan.test.test_normalization) test_high_level_validators_ok() (in module tomoscan.test.test_validator) test_invalid_path() (in module tomoscan.test.test_scanfactory) test_is_valid_for_reconstruction() (in module tomoscan.test.test_validator) test_normalization_scalar_normalization() (in module tomoscan.test.test_normalization) test_normalize_chebyshev_2D() (in module tomoscan.test.test_normalization) test_normalize_dataset() (in module tomoscan.test.test_normalization) test_normalize_lsqr_spline_2D() (in module tomoscan.test.test_normalization) test_normalize_roi() (in module tomoscan.test.test_normalization) test_one_nx() (in module tomoscan.test.test_scanfactory) test_one_two_nx() (in module tomoscan.test.test_scanfactory) test_phase_retrieval_validator() (in module tomoscan.test.test_validator) test_progress() (in module tomoscan.test.test_progress) test_reconstruction_validator_not_ok() (in module tomoscan.test.test_validator) test_ReducedFramesInfo() (in module tomoscan.test.test_scanbase) test_save_load_reduced_darks() (in module tomoscan.test.test_scanbase) test_scan_edf() (in module tomoscan.test.test_scanfactory) test_serie_scan() (in module tomoscan.test.test_serie) test_serie_utils() (in module tomoscan.test.test_serie) test_serie_volume() (in module tomoscan.test.test_serie) test_Source_API() (in module tomoscan.test.test_scanbase) test_tomoobject() (in module tomoscan.test.test_tomoobject) test_TomoScanBase_API() (in module tomoscan.test.test_scanbase) test_two_nx() (in module tomoscan.test.test_scanfactory) test_update_metadata() (in module tomoscan.test.test_volume_utils) test_validatorbase() (in module tomoscan.test.test_validator) test_version() (in module tomoscan.test.test_version) test_volume_base() (in module tomoscan.test.test_volume_base) TestCheckVirtualSourcesExists (class in tomoscan.test.test_io) TestFlatFieldCorrection (class in tomoscan.test.test_scanbase) TIFFVolume (class in tomoscan.esrf.volume.tiffvolume) TIFFVolumeIdentifier (class in tomoscan.esrf.identifier.tiffidentifier) TimeSystem (class in tomoscan.unitsystem) to_dict() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.scanbase.TomoScanBase method) to_dict_of_str() (tomoscan.serie.Serie method) tomo_n (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property) TomoFrame (class in tomoscan.esrf.scan.nxtomoscan) TomoObject (class in tomoscan.tomoobject) tomoscan module tomoscan.esrf module tomoscan.esrf.edfscan module tomoscan.esrf.hdf5scan module tomoscan.esrf.identifier module tomoscan.esrf.identifier.edfidentifier module tomoscan.esrf.identifier.folderidentifier module tomoscan.esrf.identifier.hdf5Identifier module tomoscan.esrf.identifier.jp2kidentifier module tomoscan.esrf.identifier.rawidentifier module tomoscan.esrf.identifier.tiffidentifier module tomoscan.esrf.identifier.url_utils module tomoscan.esrf.mock module tomoscan.esrf.scan module tomoscan.esrf.scan.edfscan module tomoscan.esrf.scan.framereducer module tomoscan.esrf.scan.framereducer.edfframereducer module tomoscan.esrf.scan.framereducer.hdf5framereducer module tomoscan.esrf.scan.hdf5scan module tomoscan.esrf.scan.mock module tomoscan.esrf.scan.nxtomoscan module tomoscan.esrf.scan.utils module tomoscan.esrf.utils module tomoscan.esrf.volume module tomoscan.esrf.volume.edfvolume module tomoscan.esrf.volume.hdf5volume module tomoscan.esrf.volume.jp2kvolume module

tomoscan.esrf.volume.mock module tomoscan.esrf.volume.rawvolume module tomoscan.esrf.volume.singleframebase module tomoscan.esrf.volume.tiffvolume module tomoscan.esrf.volume.utils module tomoscan.factory module tomoscan.framereducerbase module tomoscan.identifier module tomoscan.io module tomoscan.nexus module tomoscan.nexus.paths module tomoscan.nexus.paths.nxdetector module tomoscan.nexus.paths.nxinstrument module tomoscan.nexus.paths.nxmonitor module tomoscan.nexus.paths.nxsample module tomoscan.nexus.paths.nxsource module tomoscan.nexus.paths.nxtomo module tomoscan.nexus.paths.nxtransformations module tomoscan.nexus.utils module tomoscan.normalization module tomoscan.progress module tomoscan.scanbase module tomoscan.scanfactory module tomoscan.serie module tomoscan.test module tomoscan.test.conftest module tomoscan.test.test_framereducerbase module tomoscan.test.test_hdf5_utils module tomoscan.test.test_io module tomoscan.test.test_normalization module tomoscan.test.test_progress module tomoscan.test.test_scanbase module tomoscan.test.test_scanfactory module tomoscan.test.test_serie module tomoscan.test.test_tomoobject module tomoscan.test.test_utils module tomoscan.test.test_validator module tomoscan.test.test_version module tomoscan.test.test_volume_base module tomoscan.test.test_volume_utils module tomoscan.test.utils module tomoscan.tomoobject module tomoscan.unitsystem module tomoscan.unitsystem.electriccurrentsystem module tomoscan.unitsystem.energysystem module tomoscan.unitsystem.metricsystem module tomoscan.unitsystem.timesystem module tomoscan.unitsystem.unit module tomoscan.unitsystem.voltagesystem module tomoscan.utils module tomoscan.utils.decorator module tomoscan.utils.geometry module tomoscan.utils.hdf5 module tomoscan.utils.io module tomoscan.utils.volume module tomoscan.validator module tomoscan.version module tomoscan.volumebase module TomoScanBase (class in tomoscan.scanbase) type (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property)

U

Unit (class in tomoscan.unitsystem) update() (tomoscan.esrf.scan.edfscan.EDFTomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan method) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan method) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan method) (tomoscan.io.HDF5File method) (tomoscan.scanbase.TomoScanBase method)

update_metadata() (in module tomoscan.utils.volume) UrlSettings (class in tomoscan.esrf.identifier.url_utils) userblock_size (tomoscan.io.HDF5File property) UtilsTest (class in tomoscan.test.utils)

V

ValidatorBase (class in tomoscan.validator) values() (tomoscan.io.HDF5File method) visit() (tomoscan.io.HDF5File method) visititems() (tomoscan.io.HDF5File method) VolumeBase (class in tomoscan.volumebase) VolumeIdentifier (class in tomoscan.identifier) VolumeSingleFrameBase (class in tomoscan.esrf.volume.singleframebase)

voxel_size (tomoscan.esrf.volume.edfvolume.EDFVolume property) (tomoscan.esrf.volume.hdf5volume.HDF5Volume property) (tomoscan.esrf.volume.jp2kvolume.JP2KVolume property) (tomoscan.esrf.volume.rawvolume.RawVolume property) (tomoscan.esrf.volume.singleframebase.VolumeSingleFrameBase property) (tomoscan.esrf.volume.tiffvolume.MultiTIFFVolume property) (tomoscan.esrf.volume.tiffvolume.TIFFVolume property) (tomoscan.volumebase.VolumeBase property)

X

x_flipped (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property)

x_pixel_size (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) XRD3DFrame (class in tomoscan.esrf.scan.nxtomoscan)

Y

y_flipped (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property) (tomoscan.scanbase.TomoScanBase property)

y_pixel_size (tomoscan.esrf.scan.edfscan.EDFTomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5TomoScan property) (tomoscan.esrf.scan.nxtomoscan.HDF5XRD3DScan property) (tomoscan.esrf.scan.nxtomoscan.NXtomoScan property)