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tomoscanΒΆ

tomoscan aims to provide an unified interface to read tomography data from several file format. For now it can handle:

  • acquisitions (scan):
    • nexus format (using NXtomo - HDF5)

    • spec - format (using edf)

  • volumes:
    • single frame file:
      • EDF

      • JP2K

      • tiff

    • multi frame:
      • HDF5

      • multitiff

Note

You can also convert EDF dataset to obtain an HDF5 - NXTomo compliant file by using nxtomomill. tomoscan will not produce any other file.

tomoscan is one of the tomotools developed at the european synchrotron radiation facility

  • language details
    • Standard acquisition vs half acquisition
  • tomoscan API
    • tomoscan
      • tomoscan.esrf
      • tomoscan.factory
      • tomoscan.framereducerbase
      • tomoscan.identifier
      • tomoscan.io
      • tomoscan.nexus
      • tomoscan.normalization
      • tomoscan.progress
      • tomoscan.scanbase
      • tomoscan.scanfactory
      • tomoscan.serie
      • tomoscan.test
      • tomoscan.tomoobject
      • tomoscan.unitsystem
      • tomoscan.utils
      • tomoscan.validator
      • tomoscan.version
      • tomoscan.volumebase
  • identifiers (url)
    • scan identifiers
      • HDF5Scan (NXtomo) identifier
      • EDFScan (spec) identifier
    • volume identifiers
      • Multi frame per file volume
      • Single frame per file volume
  • Examples
    • Read data from an EDF acquisition
      • Get a simple dataset for test (this dataset is a pure noise)
      • create an instance of EDFTomoScan
    • Read data from an HDF5 acquisition
      • Get a simple dataset for test (this dataset is a pure noise)
      • create an instance of HDF5TomoScan
    • Volumes
      • Context
      • overview
      • Volume API

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