tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer

class tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer(scan: TomoScanBase, reduced_method: ReduceMethod, target: REDUCER_TARGET, output_dtype: Optional[dtype], input_flat_pattern='ref*.*[0-9]{3,4}_[0-9]{3,4}', input_dark_pattern='darkend[0-9]{3,4}', flat_output_prefix='refHST', dark_output_prefix='dark.edf', overwrite=False, file_ext='.edf')

Bases: FrameReducerBase

__init__(scan: TomoScanBase, reduced_method: ReduceMethod, target: REDUCER_TARGET, output_dtype: Optional[dtype], input_flat_pattern='ref*.*[0-9]{3,4}_[0-9]{3,4}', input_dark_pattern='darkend[0-9]{3,4}', flat_output_prefix='refHST', dark_output_prefix='dark.edf', overwrite=False, file_ext='.edf')

Methods

__init__(scan, reduced_method, target, ...)
getDARK_N(scan)
getTomo_N(scan)
get_closest_SR_current(scan_dir[, refFile])	Parse files contained in the given directory to get information about the incoming energy for the serie iSerie
get_closest_count_time(scan_dir[, refFile])
get_info(keyword)
get_n_digits(_file, directory)
get_originals()	compute the list of originals files to be used to compute the reducer target.
get_series_value(fileNames, file_ext)
group_files_per_serie(files, series)
preprocess()
preprocess_PCOTomo()
remove_raw_files()	Remove orignals files fitting the target (dark or flat files)
run()

Attributes

DARKHST_PREFIX
RAW_DARK_RE	regular expression to discover raw dark files
RAW_FLAT_RE	regular expression to discover flat files
REFHST_PREFIX
input_dark_pattern
input_flat_pattern
output_dtype
overwrite
reduced_method
reducer_target
scan

RAW_DARK_RE = 'darkend[0-9]{3,4}'

regular expression to discover raw dark files

RAW_FLAT_RE = 'ref*.*[0-9]{3,4}_[0-9]{3,4}'

regular expression to discover flat files

static get_closest_SR_current(scan_dir, refFile=None)

Parse files contained in the given directory to get information about the incoming energy for the serie iSerie

Parameters:

• scan_dir – directory containing the acquisition

• refFile – the refXXXX_YYYY which should contain information about the energy.

Returns:

the energy in keV or none if no energy found

get_originals() → list

compute the list of originals files to be used to compute the reducer target.

remove_raw_files()

Remove orignals files fitting the target (dark or flat files)