tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer#

class tomoscan.esrf.scan.framereducer.edfframereducer.EDFFrameReducer(scan, reduced_method, target, output_dtype, input_flat_pattern='ref*.*[0-9]{3,4}_[0-9]{3,4}', input_dark_pattern='darkend[0-9]{3,4}', flat_output_prefix='refHST', dark_output_prefix='dark.edf', overwrite=False, file_ext='.edf')#

Bases: FrameReducerBase

__init__(scan, reduced_method, target, output_dtype, input_flat_pattern='ref*.*[0-9]{3,4}_[0-9]{3,4}', input_dark_pattern='darkend[0-9]{3,4}', flat_output_prefix='refHST', dark_output_prefix='dark.edf', overwrite=False, file_ext='.edf')#

Methods

__init__(scan, reduced_method, target, ...)

getDARK_N(scan)

getTomo_N(scan)

get_closest_SR_current(scan_dir[, refFile])

Parse files contained in the given directory to get information about the incoming energy for the serie iSerie

get_closest_count_time(scan_dir[, refFile])

get_info(keyword)

get_n_digits(_file, directory)

get_originals()

compute the list of originals files to be used to compute the reducer target.

get_series_value(fileNames, file_ext)

group_files_per_serie(files, series)

preprocess()

preprocess_PCOTomo()

remove_raw_files()

Remove orignals files fitting the target (dark or flat files)

run()

rtype:

dict

Attributes

DARKHST_PREFIX

RAW_DARK_RE

regular expression to discover raw dark files

RAW_FLAT_RE

regular expression to discover flat files

REFHST_PREFIX

input_dark_pattern

input_flat_pattern

output_dtype

rtype:

Optional[dtype]

overwrite

reduced_method

rtype:

ReduceMethod

reducer_target

rtype:

REDUCER_TARGET

scan

rtype:

TomoScanBase
RAW_DARK_RE = 'darkend[0-9]{3,4}'#

regular expression to discover raw dark files

RAW_FLAT_RE = 'ref*.*[0-9]{3,4}_[0-9]{3,4}'#

regular expression to discover flat files

static get_closest_SR_current(scan_dir, refFile=None)#

Parse files contained in the given directory to get information about the incoming energy for the serie iSerie

Parameters:

  • scan_dir – directory containing the acquisition

  • refFile – the refXXXX_YYYY which should contain information about the energy.

Returns:

the energy in keV or none if no energy found

get_originals()#

compute the list of originals files to be used to compute the reducer target.

Return type:

list

remove_raw_files()#

Remove orignals files fitting the target (dark or flat files)

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